CGH-Plotter: MATLAB toolbox for CGH-data analysis

نویسندگان

  • Reija Autio
  • Sampsa Hautaniemi
  • Päivikki Kauraniemi
  • Olli Yli-Harja
  • Jaakko Astola
  • Maija Wolf
  • Anne Kallioniemi
چکیده

CGH-Plotter is a MATLAB toolbox with a graphical user interface for the analysis of comparative genomic hybridization (CGH) microarray data. CGH-Plotter provides a tool for rapid visualization of CGH-data according to the locations of the genes along the genome. In addition, the CGH-Plotter identifies regions of amplifications and deletions, using k-means clustering and dynamic programming. The application offers a convenient way to analyze CGH-data and can also be applied for the analysis of cDNA microarray expression data. CGH-Plotter toolbox is platform independent and requires MATLAB 6.1 or higher to operate.

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عنوان ژورنال:
  • Bioinformatics

دوره 19 13  شماره 

صفحات  -

تاریخ انتشار 2003